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[FIXED] Recent updates on GEXF time support
Posted: 26 Sep 2010 18:02
by mbastian
Many work has been recently done for time support in the 0.7 beta, more detail coming soon. Some of these changes directly concern the GEXF format.
I propose the following changes/improvements:
- Rename the "timetype" attribute in to "timeformat". This attribute is set on <graph> to specify how time information is encoded, either like a date or like a double.
- The "timeformat" is currently either float or date and default value is date. I propose to replace float by double because double is how it is in Gephi. I also propose to set default value to double as is the one that is the less constrained, date needs a proper date (yyyy-mm-dd) formatting.
- Add open intervals. Currently all intervals are inclusive. To be consistent we need open intervals as well. I propose therefore to add startopen and endopen attributes. Open intervals are also needed to convert fixed date points into time intervals concept. I explain
If I have a value at three different points in the time:
Code: Select all
2001 => 2.1
2002 => 5.2
2003 => 6.5
Code: Select all
[2001, 2002) => 2.1
[2002, 2003) => 5.2
[2003, +inf] => 6.5
Another precision about dynamic attributes. In Gephi we now have new dynamic types for all static types (float, string, ...). I propose not to create new type keyword in GEXF but simply use these types when the
type value is set to
dynamic.
For example if I do:
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<attributes class="node" type="dynamic">
<attribute id="0" title="type" type="string"/>
<attribute id="1" title="Attribute 1" type="float"/>
</attributes>
That would create
DYNAMIC_STRING and
DYNAMIC_FLOAT attribute columns in Gephi. As several
attributes markup can be definied in a GEXF file, it's easy to mix static and dynamic types.
Re: Recent updates on GEXF time support
Posted: 26 Sep 2010 20:35
by admin
I agree with all but the replacement of float by double:
I propose to replace float by double because double is how it is in Gephi.
Is not a good reason. What is the benefit of using doubles instead of floats?
Re: Recent updates on GEXF time support
Posted: 26 Sep 2010 21:10
by jbilcke
I think this is preferable to use Double, since they have 64-bits floating point precision, while Float only have 32 bits.
This would allow developers to directly use timestamps, without need to convert it to a particular calendar reference, or XML format,
because timestamps are encoded in 64 bits too (if you still want to be able to load your GEXFs after 01-01-2038.. think about sustainable datasets
)
Re: Recent updates on GEXF time support
Posted: 26 Sep 2010 21:12
by mbastian
Yes I agree, using float was a mistake. Double is the default choice, as float is more narrow.
Re: Recent updates on GEXF time support
Posted: 21 Oct 2010 18:16
by admin
It's also important to let people define integers, just because it's a natural and efficient way to encode steps. Gephi can however handle these values as double internally.
Re: Recent updates on GEXF time support
Posted: 31 Oct 2010 19:39
by psychemedia
Is it possible to dynamically define node size and colours according to time slices, as well as well as simply toggling the display or not of a node?
Re: Recent updates on GEXF time support
Posted: 17 Nov 2010 18:45
by admin
It is possible to define it inside a GEXF file, but this is a missing feature in Gephi.
Re: Recent updates on GEXF time support
Posted: 28 Nov 2010 18:12
by admin
As
noted by Skye Bender-deMoll, we don't use the same concept of slices as described by their paper and implemented in SoNIA.
I propose to use a more accurate word. "Spell" seems good as it is a moment or a period of time.
Re: Recent updates on GEXF time support
Posted: 08 Dec 2010 18:58
by Luciano
Hi,
i created a dynamic network with a dynamic attribute for nodes defined as:
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<attributes class="node" type="dynamic">
<attribute id="0" title="Attribute 1" type="float"/>
</attributes>
I would like for nodes to change their size according to this attribute. For that I am using in each node, for example:
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<node id="0" label="USA">
<attvalues>
<attvalue for="0" value="9" start="2006" endopen="2007" />
<attvalue for="0" value="21" start="2007" endopen="2008" />
<attvalue for="0" value="17" start="2008" endopen="2009" />
<attvalue for="0" value="19" start="2009" endopen="2010" />
</attvalues>
<slices>
<slice start="2006" endopen="2010" />
</slices>
With this, nodes are properly shown (i.e. whenever corresponds according to the slices), however, their size don't change according to the attribute id="0" (which I set in Ranking > Nodes).
Any thoughts on what could be wrong? Or is this something not supported in Gephi 0.7 yet?
Thanks a lot.
Re: Recent updates on GEXF time support
Posted: 08 Dec 2010 21:38
by admin
Hi,
You do right, but this feature is currently not supported in Gephi.
