Gephi Closing everytime graph is loading

Once it's running
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piyushrana1991
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Joined:23 Jun 2016 18:18
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Gephi Closing everytime graph is loading

Post by piyushrana1991 » 23 Jun 2016 18:21

Gephi cloasing everytime with below error message when graph is loading:_

/usr/lib/gephi/gephi-0.9.1$ sudo bin/gephi
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00007f09399bc0d4, pid=5859, tid=139675711903488
#
# JRE version: Java(TM) SE Runtime Environment (8.0_91-b14) (build 1.8.0_91-b14)
# Java VM: Java HotSpot(TM) 64-Bit Server VM (25.91-b14 mixed mode linux-amd64 compressed oops)
# Problematic frame:
# C [libdrm_intel.so.1+0x30d4] drm_intel_bo_references+0x4
#
# Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again
#
# An error report file with more information is saved as:
# /usr/lib/gephi/gephi-0.9.1/hs_err_pid5859.log
#
# If you would like to submit a bug report, please visit:
# http://bugreport.java.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
bin/../platform/lib/nbexec: line 474: 5859 Aborted (core dumped) "/usr/lib/jvm/java-8-oracle/bin/java" -Djdk.home="/usr/lib/jvm/java-8-oracle" -classpath "/usr/lib/gephi/gephi-0.9.1/platform/lib/boot.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/org-openide-modules.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/org-openide-util.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/org-openide-util-lookup.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/org-openide-util-ui.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_ar_SA.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_bg.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_ca.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_cs.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_de.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_es.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_fr.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_gl_ES.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_in_ID.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_it.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_ja.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_ko.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_nl_NL.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_pl.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_pt_BR.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_pt_PT.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_ro.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_ru.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_si.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_sq.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_sv.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_tr.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_zh_CN.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/boot_zh_TW.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_ar_SA.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_bg.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_ca.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_cs.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_de.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_es.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_fr.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_gl_ES.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_in_ID.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_it.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_ja.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_ko.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_nl_NL.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_pl.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_pt_BR.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_pt_PT.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_ro.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_ru.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_si.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_sq.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_sv.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_tr.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_zh_CN.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-modules_zh_TW.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_ar_SA.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_bg.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_ca.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_cs.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_de.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_es.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_fr.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_gl_ES.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_in_ID.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_it.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_ja.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_ko.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_bg.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_ca.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_cs.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_de.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_es.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_fr.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_gl_ES.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_in_ID.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_it.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_ja.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_ko.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_nl_NL.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_pl.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_pt_BR.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_ro.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_ru.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_si.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_sv.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_tr.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-lookup_zh_CN.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_nl_NL.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_pl.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_pt_BR.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_pt_PT.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_ro.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_ru.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_si.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_sq.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_sv.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_tr.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-ui_ja.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-ui_pt_BR.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-ui_ru.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util-ui_zh_CN.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_zh_CN.jar:/usr/lib/gephi/gephi-0.9.1/platform/lib/locale/org-openide-util_zh_TW.jar:/usr/lib/jvm/java-8-oracle/lib/dt.jar:/usr/lib/jvm/java-8-oracle/lib/tools.jar" -Dnetbeans.dirs="/usr/lib/gephi/gephi-0.9.1/platform:/usr/lib/gephi/gephi-0.9.1/gephi:" -Dnetbeans.home="/usr/lib/gephi/gephi-0.9.1/platform" '-Xms64m' '-Xmx512m' '-Xverify:none' '-Dsun.java2d.noddraw=true' '-Dsun.awt.noerasebackground=true' '-Dnetbeans.indexing.noFileRefresh=true' '-Dplugin.manager.check.interval=EVERY_DAY' -XX:+HeapDumpOnOutOfMemoryError -XX:HeapDumpPath="/home/knoldus/.gephi/0.9.1/dev/var/log/heapdump.hprof" -splash:"/home/knoldus/.gephi/0.9.1/dev/var/cache/splash.png" org.netbeans.Main --cachedir "/home/knoldus/.gephi/0.9.1/dev/var/cache" --userdir "/home/knoldus/.gephi/0.9.1/dev" "--branding" "gephi" 0<&0

debussyman
Posts:1
Joined:14 Aug 2016 18:51
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Re: Gephi Closing everytime graph is loading

Post by debussyman » 14 Aug 2016 18:53

I found the workaround mentioned here solved the issue for me - https://github.com/gephi/gephi/issues/1535

Basically, start Gephi with the ENV var LIBGL_ALWAYS_SOFTWARE=1

BrentKo
Posts:1
Joined:20 Jun 2017 12:24
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Re: Gephi Closing everytime graph is loading

Post by BrentKo » 20 Jun 2017 12:30

I had to delete the old one and download the new Java Runtime Environment one and then update it to the latest version https://yumdownload.com/java-runtime-environment .
Also the option in my case, otherwise it will not load.

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