Build failure of Gephi-0.8.2

[kdatta1978]

Hi,

I cloned the Gephi codebase from github and checked out 0.8.2, but getting a build error. I'm trying to build Gephi on RedHat-6.4 with Apache Maven-3.2.1. I have once deleted ~/.m2/repository, but it didn't solve the problem.

[WARNING] Error injecting: org.apache.maven.shared.dependency.graph.internal.Maven3DependencyGraphBuilder
java.lang.NoClassDefFoundError: org/sonatype/aether/graph/Dependency
at java.lang.Class.getDeclaredMethods0(Native Method)
at java.lang.Class.privateGetDeclaredMethods(Class.java:2531)
at java.lang.Class.getDeclaredMethods(Class.java:1855)
at com.google.inject.spi.InjectionPoint.getInjectionPoints(InjectionPoint.java:674)
at com.google.inject.spi.InjectionPoint.forInstanceMethodsAndFields(InjectionPoint.java:366)
at com.google.inject.internal.ConstructorBindingImpl.getInternalDependencies(ConstructorBindingImpl.java:165)
at com.google.inject.internal.InjectorImpl.getInternalDependencies(InjectorImpl.java:609)
at com.google.inject.internal.InjectorImpl.cleanup(InjectorImpl.java:565)
at com.google.inject.internal.InjectorImpl.initializeJitBinding(InjectorImpl.java:551)
at com.google.inject.internal.InjectorImpl.createJustInTimeBinding(InjectorImpl.java:865)
at com.google.inject.internal.InjectorImpl.createJustInTimeBindingRecursive(InjectorImpl.java:790)
at com.google.inject.internal.InjectorImpl.getJustInTimeBinding(InjectorImpl.java:278)
at com.google.inject.internal.InjectorImpl.getBindingOrThrow(InjectorImpl.java:210)
at com.google.inject.internal.InjectorImpl.getProviderOrThrow(InjectorImpl.java:986)
at com.google.inject.internal.InjectorImpl.getProvider(InjectorImpl.java:1019)
at com.google.inject.internal.InjectorImpl.getProvider(InjectorImpl.java:982)
at com.google.inject.internal.InjectorImpl.getInstance(InjectorImpl.java:1032)
at org.eclipse.sisu.space.AbstractDeferredClass.get(AbstractDeferredClass.java:48)
at com.google.inject.internal.ProviderInternalFactory.provision(ProviderInternalFactory.java:86)
at com.google.inject.internal.InternalFactoryToInitializableAdapter.provision(InternalFactoryToInitializableAdapter.java:55)
at com.google.inject.internal.ProviderInternalFactory$1.call(ProviderInternalFactory.java:70)
at com.google.inject.internal.ProvisionListenerStackCallback$Provision.provision(ProvisionListenerStackCallback.java:100)
at org.eclipse.sisu.plexus.PlexusLifecycleManager.onProvision(PlexusLifecycleManager.java:133)
at com.google.inject.internal.ProvisionListenerStackCallback$Provision.provision(ProvisionListenerStackCallback.java:109)
at com.google.inject.internal.ProvisionListenerStackCallback.provision(ProvisionListenerStackCallback.java:55)
at com.google.inject.internal.ProviderInternalFactory.circularGet(ProviderInternalFactory.java:68)
at com.google.inject.internal.InternalFactoryToInitializableAdapter.get(InternalFactoryToInitializableAdapter.java:47)
at com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1054)
at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.Scopes$1$1.get(Scopes.java:59)
at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
at com.google.inject.internal.InjectorImpl$2$1.call(InjectorImpl.java:997)
at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1047)
at com.google.inject.internal.InjectorImpl$2.get(InjectorImpl.java:993)
at org.eclipse.sisu.inject.LazyBeanEntry.getValue(LazyBeanEntry.java:82)
at org.eclipse.sisu.plexus.LazyPlexusBean.getValue(LazyPlexusBean.java:51)
at org.codehaus.plexus.DefaultPlexusContainer.lookup(DefaultPlexusContainer.java:260)
at org.codehaus.plexus.DefaultPlexusContainer.lookup(DefaultPlexusContainer.java:240)
at org.apache.maven.shared.dependency.graph.internal.DefaultDependencyGraphBuilder.buildDependencyGraph(DefaultDependencyGraphBuilder.java:60)
at org.codehaus.mojo.nbm.AbstractNbmMojo.createDependencyTree(AbstractNbmMojo.java:344)
at org.codehaus.mojo.nbm.NetBeansManifestUpdateMojo.execute(NetBeansManifestUpdateMojo.java:392)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:106)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:317)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:152)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:555)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:214)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:158)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
Caused by: java.lang.ClassNotFoundException: org.sonatype.aether.graph.Dependency
at org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy.loadClass(SelfFirstStrategy.java:50)
at org.codehaus.plexus.classworlds.realm.ClassRealm.unsynchronizedLoadClass(ClassRealm.java:259)
at org.codehaus.plexus.classworlds.realm.ClassRealm.loadClass(ClassRealm.java:235)
at org.codehaus.plexus.classworlds.realm.ClassRealm.loadClass(ClassRealm.java:227)
... 63 more

[hbruch]

I encountered the same issue, which seems to relate to MNG-5482. Upgrading the following versions in the pom.xml solve it for me:

Code: Select all

        <gephi.maven.requiredVersion>3.2.1</gephi.maven.requiredVersion>
...
        <gephi.maven-compiler-plugin.version>3.1</gephi.maven-compiler-plugin.version>
...
        <gephi.nbm-maven-plugin.version>3.13.3</gephi.nbm-maven-plugin.version>

Best regards,
Holger

PS: Not yet tested in depth: Changing the netbeans.version in the same file to RELEASE74 seems to be sufficient to solve JDK8 starting issues:

Code: Select all

        <netbeans.version>RELEASE74</netbeans.version>