Finding nodes that share more than one edge

Visual manipulations and refinements
Post Reply [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
rjalex
Posts:15
Joined:06 Jan 2013 13:26
[phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Finding nodes that share more than one edge

Post by rjalex » 02 Feb 2018 12:26

Dear friends,
I have a bipartite oriented graph modeling a metabolic network with two types of molecules: xenobiotics (drugs and other biological exogenous substance) and their metabolizing enzymes.

Have three types of relations:
  • An enzyme can metabolize a xenobiotic
  • A xenobitoc can inhibit an enzyme
  • A xenobiotic can augment an enzyme
In some (rarish) cases a xenobiotic is both metabolized by an enzyme but at the same time it also inhibits or augments the same enzyme.

This is modeled with two oriented arcs between the two molecules, one expresses the metabolizes relation while the other the inhibits.

Is there a way to filter the graph to only show these doubly linked molecules?

Thank you

User avatar
eduramiba
Gephi Code Manager
Posts:1064
Joined:22 Mar 2010 15:30
Location:Madrid, Spain
[phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable

Re: Finding nodes that share more than one edge

Post by eduramiba » 02 Feb 2018 12:40

Hi,
The multimode networks plugin might be useful: https://seinecle.github.io/gephi-tutori ... ph-en.html

rjalex
Posts:15
Joined:06 Jan 2013 13:26
[phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable

Re: Finding nodes that share more than one edge

Post by rjalex » 02 Feb 2018 14:16

Very interesting. I'll never stop learning :-)
Thank you very much

Post Reply
[phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
[phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable