I am unable to completely start Gephi. I am running OS X 10.6.8 in 64-bit mode. When I start Gephi, it starts up, displays the Welcome dialog (sometimes but not always with text), and displays "Initializing" in the main window. It then takes a lot of cpu but never does anything more.
I do have Java 6 installed (standard Mac OS X version):
Macavity-4:~ muller$ java -version
java version "1.6.0_35"
Java(TM) SE Runtime Environment (build 1.6.0_35-b10-428-10M3811)
Java HotSpot(TM) 64-Bit Server VM (build 20.10-b01-428, mixed mode)
When I run the test tool you provide on your web site (http://mr.myogl.org/), it fails to load and gives this error: Error : init_failed : unsupported os / arch ( Mac OS X / x86_64 )
Startup hangs on Mac OS X 10.6 64-bit
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admin
- Gephi Community Manager
- Posts:964
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Re: Startup hangs on Mac OS X 10.6 64-bit
Hi,
There is a problem with the graphic card drivers. What is the name of your graphic card?
There is a problem with the graphic card drivers. What is the name of your graphic card?
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bmuller
- Posts:6
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Re: Startup hangs on Mac OS X 10.6 64-bit
System Profiler says I have 2 cards, Intel HD Graphics and NVIDIA GeForce GT 330M. I'm running a MacBook Pro.
NVIDIA GeForce GT 330M:
Chipset Model: NVIDIA GeForce GT 330M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 512 MB
Vendor: NVIDIA (0x10de)
Device ID: 0x0a29
Revision ID: 0x00a2
ROM Revision: 3560
gMux Version: 1.9.22
NVIDIA GeForce GT 330M:
Chipset Model: NVIDIA GeForce GT 330M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 512 MB
Vendor: NVIDIA (0x10de)
Device ID: 0x0a29
Revision ID: 0x00a2
ROM Revision: 3560
gMux Version: 1.9.22
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mbastian
- Gephi Architect
- Posts:728
- Joined:10 Dec 2009 10:11
- Location:San Francisco, CA [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Startup hangs on Mac OS X 10.6 64-bit
Hi,
First, I'm not sure the http://mr.myogl.org/ tool supports Mac OS X so I wouldn't trust that one. Your configuration should work just fine. Can you look to get the messages.log file and post it here?
First, I'm not sure the http://mr.myogl.org/ tool supports Mac OS X so I wouldn't trust that one. Your configuration should work just fine. Can you look to get the messages.log file and post it here?
-
bmuller
- Posts:6
- Joined:25 Sep 2012 12:47 [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Startup hangs on Mac OS X 10.6 64-bit
Here's the content of the latest messages.log:
-------------------------------------------------------------------------------
>Log Session: Tuesday, September 25, 2012 5:19:58 AM PDT
>System Info:
Product Version = Gephi 0.8.1 beta 201202141941
Operating System = Mac OS X version 10.6.8 running on x86_64
Java; VM; Vendor = 1.6.0_35; Java HotSpot(TM) 64-Bit Server VM 20.10-b01-428; Apple Inc.
Runtime = Java(TM) SE Runtime Environment 1.6.0_35-b10-428-10M3811
Java Home = /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home
System Locale; Encoding = en_US (gephi); MacRoman
Home Directory = /Users/muller
Current Directory = /
User Directory = /Users/muller/Library/Application Support/gephi/0.8.1/dev
Cache Directory = /Users/muller/Library/Application Support/gephi/0.8.1/dev/var/cache
Installation = /Applications/gephi.app/Contents/Resources/gephi/gephi
/Applications/gephi.app/Contents/Resources/gephi/platform
Boot & Ext. Classpath = /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jsfd.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/classes.jar:/System/Library/Frameworks/JavaVM.framework/Frameworks/JavaRuntimeSupport.framework/Resources/Java/JavaRuntimeSupport.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/ui.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/laf.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/sunrsasign.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jsse.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jce.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/charsets.jar:/System/Library/Java/Extensions/AppleScriptEngine.jar:/System/Library/Java/Extensions/dns_sd.jar:/System/Library/Java/Extensions/j3daudio.jar:/System/Library/Java/Extensions/j3dcore.jar:/System/Library/Java/Extensions/j3dutils.jar:/System/Library/Java/Extensions/jai_codec.jar:/System/Library/Java/Extensions/jai_core.jar:/System/Library/Java/Extensions/mlibwrapper_jai.jar:/System/Library/Java/Extensions/MRJToolkit.jar:/System/Library/Java/Extensions/QTJava.zip:/System/Library/Java/Extensions/vecmath.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext/apple_provider.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext/dnsns.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext/localedata.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext/sunjce_provider.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext/sunpkcs11.jar
Application Classpath = /Applications/gephi.app/Contents/Resources/gephi/platform/lib/boot.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-modules.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-util-lookup.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-util.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_zh_TW.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/dt.jar
Startup Classpath = /Applications/gephi.app/Contents/Resources/gephi/platform/core/core.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/org-openide-filesystems.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_zh_TW.jar:/Applications/gephi.app/Contents/MacOS/../Resources/gephi/bin/../gephi/core/locale/core_gephi.jar
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Loading native libraries
INFO [org.netbeans.core.startup.NbEvents]: Turning on modules:
org.openide.util.lookup [8.11.1 201202141941]
org.openide.util [8.19.1 201202141941]
org.openide.modules [7.27.1 201202141941]
org.openide.filesystems [7.53.2 201202141941]
org.openide.awt [7.39.1 201202141941]
org.netbeans.api.progress/1 [1.26.1 201202141941]
org.openide.dialogs [7.23.1 201202141941]
org.openide.nodes [7.25.1 201202141941]
org.openide.windows [6.48.2 201202141941]
org.netbeans.modules.editor.mimelookup/1 [1.24.1 201202141941]
org.openide.text [6.43.2 201202141941]
org.netbeans.swing.tabcontrol [1.29.1 201202141941]
org.netbeans.swing.outline [1.17.2 201202141941]
org.openide.explorer [6.40.1 201202141941]
org.openide.actions [6.24.1 201202141941]
org.netbeans.modules.queries/1 [1.25.1 201202141941]
org.netbeans.api.annotations.common/1 [1.11.1 201202141941]
org.openide.loaders [7.32.1 201202141941]
org.openide.io [1.29.1 201202141941]
org.netbeans.swing.plaf [1.23.1 201202141941]
org.netbeans.swing.dirchooser [1.1 120326]
org.netbeans.spi.quicksearch [1.12.1 201202141941]
org.netbeans.bootstrap/1 [2.44.3 201202141941]
org.netbeans.core.startup/1 [1.36.1 201202141941]
org.netbeans.modules.settings/1 [1.33.1 201202141941]
org.netbeans.modules.sendopts/2 [2.15.1 201202141941]
org.netbeans.modules.progress.ui [1.18.1 201202141941]
org.netbeans.modules.print [7.11.1 201202141941]
org.netbeans.modules.keyring [1.8.1.1 201202141941]
org.netbeans.core/2 [3.28.1 201202141941]
org.netbeans.modules.options.api/1 [1.24.1 201202141941]
org.netbeans.modules.options.keymap [1.16.1 201202141941]
org.netbeans.libs.jna/1 [1.16.1 201202141941]
org.netbeans.modules.masterfs/2 [2.34.2 201202141941]
org.netbeans.modules.keyring.impl [1.5.2 201202141941]
org.netbeans.modules.favorites/1 [1.27.1 201202141941]
org.netbeans.modules.editor.mimelookup.impl/1 [1.16.1 201202141941]
org.netbeans.modules.autoupdate.services [1.28.2 201202141941]
org.netbeans.modules.autoupdate.ui [1.25.1 201202141941]
org.netbeans.core.windows/2 [2.41.2 201202141941]
org.netbeans.modules.applemenu/1 [1.22.1 201202141941]
org.netbeans.libs.junit4 [1.14 201202141941]
org.netbeans.core.ui/1 [1.29.1 201202141941]
org.netbeans.core.nativeaccess/1 [1.14.1 201202141941]
org.netbeans.core.io.ui/1 [1.14.1 201202141941]
org.joda.time [1.0 120326]
org.jfree [1.0 120326]
org.jdesktop.swingx [1.6.1 120326]
org.gephi.utils.longtask [0.8.0.2 120326]
org.gephi.project.api [0.8.0.2 120326]
org.gephi.graph.api [0.8.0.3 120326]
org.gephi.data.attributes.api [0.8.0.6 120326]
org.gephi.lib.javacsv [2.0 120326]
org.gephi.dynamic.api [0.8.0.6 120326]
org.gephi.utils [0.8.0.3 120326]
org.gephi.datalab.api [0.8.0.10 120326]
org.gephi.visualization.api [0.8.0.1 120326]
org.gephi.tools.api [0.8.0.1 120326]
org.gephi.lib.validation [0.4 120326]
org.gephi.ui.utils [0.8 120326]
org.gephi.lib.gleem [1.0 120326]
org.gephi.utils.collection [0.8.0.1 120326]
org.gephi.lib.commonscompress [1.1 120326]
org.gephi.io.database.drivers [0.8.0.3 120326]
org.gephi.io.importer.api [0.8.0.4 120327]
org.gephi.desktop.mrufiles.api [0.8 120326]
org.gephi.desktop.project [0.8.0.1 120327]
org.gephi.lib.jogl [1.1.0.3 120326]
org.gephi.lib.flamingo [5.0.1 120326]
org.gephi.lib.commons.codec [1.4 120326]
org.gephi.ui.components [0.8.0.6 120326]
org.gephi.visualization [0.8.0.9 120327]
org.gephi.ui.workspace [0.8.1.0 120326]
org.gephi.ui.upgrader [0.8 120329]
org.gephi.statistics.api [0.8.1.1 120326]
org.gephi.statistics.plugin [0.8.0.6 120326]
org.gephi.ui.statistics.plugin [0.8.0.4 120326]
org.gephi.lib.jcalendar [1.0 120326]
org.gephi.lib.javamail [1.0 120326]
org.gephi.io.spigot.plugin [0.8.0.1 120327]
org.gephi.ui.spigot.plugin [0.8 120327]
org.gephi.ranking.api [0.8.1.4 120328]
org.gephi.ranking.plugin [0.8.1.3 120328]
org.gephi.ui.ranking.plugin [0.8.1.2 120328]
org.gephi.ui.propertyeditor [0.8.1 120326]
org.gephi.ui.project [0.8 120326]
org.gephi.lib.beansbinding [1.2.1 120326]
org.gephi.io.processor.plugin [0.8 120327]
org.gephi.ui.processor.plugin [0.8 120327]
org.gephi.partition.api [0.8 120326]
org.gephi.partition.plugin [0.8 120326]
org.gephi.ui.partition.plugin [0.8 120326]
org.gephi.io.importer.plugin [0.8.0.6 120329]
org.gephi.ui.importer.plugin [0.8.0.2 120329]
org.gephi.io.generator.api [0.8 120327]
org.gephi.io.generator.plugin [0.8.0.1 120327]
org.gephi.ui.generator.plugin [0.8 120327]
org.gephi.timeline [0.8.1.3 120327]
org.gephi.filters.api [0.8.0.5 120326]
org.gephi.filters.plugin [0.8.0.7 120329]
org.gephi.perspective.api [0.8.1 120326]
org.gephi.desktop.perspective [0.8.2.1 120326]
org.gephi.ui.filters.plugin [0.8.0.6 120329]
org.gephi.lib.itext [5.0.1 120326]
org.gephi.io.exporter.api [0.8 120326]
org.gephi.lib.batik [1.7 120326]
org.gephi.lib.processing [1.5.1 120326]
org.gephi.preview.api [0.8.1.9 120327]
org.gephi.io.exporter.preview [0.8.0.5 120327]
org.gephi.ui.exporter.preview [0.8.0.1 120327]
org.gephi.lib.staxutils [1.0 120326]
org.gephi.io.exporter.plugin [0.8.0.6 120326]
org.gephi.ui.exporter.plugin [0.8.0.5 120326]
org.gephi.lib.timing [1.1 120326]
org.gephi.ui.components.SplineEditor [0.8.0.1 120328]
org.gephi.algorithms [0.8.0.1 120326]
org.gephi.tools.plugin [0.8.0.5 120327]
org.gephi.preview.plugin [0.8.1.6 120327]
org.gephi.layout.api [0.8.0.1 120326]
org.gephi.layout.plugin [0.8.0.3 120326]
org.gephi.graph.dhns [0.8.0.5 120326]
org.gephi.filters [0.8.0.5 120326]
org.gephi.dynamic [0.8.0.5 120329]
org.gephi.desktop.welcome [0.8.0.3 120327]
org.gephi.desktop.tools [0.8.0.3 120327]
org.gephi.desktop.timeline [0.8.1.3 120327]
org.gephi.desktop.statistics [0.8.1.2 120326]
org.gephi.desktop.spigot [0.8 120327]
org.gephi.desktop.recentfiles [1.0.1 120327]
org.gephi.desktop.ranking [0.8.1.5 120328]
org.gephi.desktop.progress [0.8.0.4 120326]
org.gephi.desktop.io.export [0.8.0.1 120326]
org.gephi.desktop.preview [0.8.1.6 120327]
org.gephi.desktop.partition [0.8 120326]
org.gephi.desktop.layout [0.8.0.5 120326]
org.gephi.desktop.importer [0.8.0.1 120327]
org.gephi.desktop.hierarchy [0.8.0.1 120327]
org.gephi.desktop.generate [0.8 120327]
org.gephi.desktop.filters [0.8.0.2 120326]
org.gephi.desktop.datalab [0.8.0.9 120326]
org.gephi.desktop.context [0.8.0.1 120326]
org.gephi.clustering.api [0.8 120326]
org.gephi.desktop.clustering [0.8.0.1 120327]
org.gephi.datalab.plugin [0.8.0.9 120327]
org.gephi.data.attributes [0.8.0.3 120326]
org.gephi.clustering.plugin [0.8 120326]
org.gephi.branding.desktop [0.8.0.8 120327]
WARNING [org.netbeans.TopSecurityManager]: use of system property netbeans.user has been obsoleted in favor of InstalledFileLocator at org.gephi.ui.upgrader.Upgrader.getCurrentVersion(Upgrader.java:123)
Current Version is 081
WARNING [org.netbeans.modules.autoupdate.updateproviders.AutoupdateCatalogFactory]: Services/AutoupdateType/org_gephi_branding_desktop_update_center.instance: url_key attribute deprecated in favor of url
WARNING [org.netbeans.modules.autoupdate.updateproviders.AutoupdateCatalogFactory]: Services/AutoupdateType/org_gephi_branding_desktop_update_center_1.instance: url_key attribute deprecated in favor of url
INFO [org.netbeans.modules.autoupdate.updateprovider.DownloadListener]: Reading URL http://gephi.org/updates/thirdparty/0.8 ... atalog.xml failed (java.io.IOException: Timeout while opening connection to http://gephi.org/updates/thirdparty/0.8 ... atalog.xml)
INFO [org.netbeans.modules.autoupdate.updateprovider.DownloadListener]: Reading URL http://gephi.org/updates/official/0.8.1 ... atalog.xml failed (java.io.IOException: Timeout while opening connection to http://gephi.org/updates/official/0.8.1 ... atalog.xml)
INFO [org.netbeans.modules.autoupdate.ui.actions.AutoupdateCheckScheduler]
java.util.concurrent.TimeoutException
at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:228)
at java.util.concurrent.FutureTask.get(FutureTask.java:91)
at org.netbeans.modules.autoupdate.updateprovider.NetworkAccess$Task$1.run(NetworkAccess.java:97)
Caused: java.io.IOException: Timeout while opening connection to http://gephi.org/updates/official/0.8.1 ... atalog.xml
at org.netbeans.modules.autoupdate.updateprovider.NetworkAccess$Task$1.run(NetworkAccess.java:117)
Caused: java.io.IOException: Timeout while opening connection to http://gephi.org/updates/official/0.8.1 ... atalog.xml
at org.netbeans.modules.autoupdate.updateprovider.DownloadListener.notifyException(DownloadListener.java:103)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogCache.copy(AutoupdateCatalogCache.java:255)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogCache.writeCatalogToCache(AutoupdateCatalogCache.java:100)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogProvider.refresh(AutoupdateCatalogProvider.java:137)
at org.netbeans.modules.autoupdate.services.UpdateUnitProviderImpl.refresh(UpdateUnitProviderImpl.java:174)
at org.netbeans.api.autoupdate.UpdateUnitProvider.refresh(UpdateUnitProvider.java:186)
[catch] at org.netbeans.modules.autoupdate.ui.actions.AutoupdateCheckScheduler$4.run(AutoupdateCheckScheduler.java:156)
at org.openide.util.RequestProcessor$Task.run(RequestProcessor.java:1411)
at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:1991)
INFO [org.netbeans.modules.autoupdate.ui.actions.AutoupdateCheckScheduler]
java.util.concurrent.TimeoutException
at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:228)
at java.util.concurrent.FutureTask.get(FutureTask.java:91)
at org.netbeans.modules.autoupdate.updateprovider.NetworkAccess$Task$1.run(NetworkAccess.java:97)
Caused: java.io.IOException: Timeout while opening connection to http://gephi.org/updates/thirdparty/0.8 ... atalog.xml
at org.netbeans.modules.autoupdate.updateprovider.NetworkAccess$Task$1.run(NetworkAccess.java:117)
Caused: java.io.IOException: Timeout while opening connection to http://gephi.org/updates/thirdparty/0.8 ... atalog.xml
at org.netbeans.modules.autoupdate.updateprovider.DownloadListener.notifyException(DownloadListener.java:103)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogCache.copy(AutoupdateCatalogCache.java:255)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogCache.writeCatalogToCache(AutoupdateCatalogCache.java:100)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogProvider.refresh(AutoupdateCatalogProvider.java:137)
at org.netbeans.modules.autoupdate.services.UpdateUnitProviderImpl.refresh(UpdateUnitProviderImpl.java:174)
at org.netbeans.api.autoupdate.UpdateUnitProvider.refresh(UpdateUnitProvider.java:186)
[catch] at org.netbeans.modules.autoupdate.ui.actions.AutoupdateCheckScheduler$4.run(AutoupdateCheckScheduler.java:156)
at org.openide.util.RequestProcessor$Task.run(RequestProcessor.java:1411)
at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:1991)
-------------------------------------------------------------------------------
>Log Session: Tuesday, September 25, 2012 5:19:58 AM PDT
>System Info:
Product Version = Gephi 0.8.1 beta 201202141941
Operating System = Mac OS X version 10.6.8 running on x86_64
Java; VM; Vendor = 1.6.0_35; Java HotSpot(TM) 64-Bit Server VM 20.10-b01-428; Apple Inc.
Runtime = Java(TM) SE Runtime Environment 1.6.0_35-b10-428-10M3811
Java Home = /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home
System Locale; Encoding = en_US (gephi); MacRoman
Home Directory = /Users/muller
Current Directory = /
User Directory = /Users/muller/Library/Application Support/gephi/0.8.1/dev
Cache Directory = /Users/muller/Library/Application Support/gephi/0.8.1/dev/var/cache
Installation = /Applications/gephi.app/Contents/Resources/gephi/gephi
/Applications/gephi.app/Contents/Resources/gephi/platform
Boot & Ext. Classpath = /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jsfd.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/classes.jar:/System/Library/Frameworks/JavaVM.framework/Frameworks/JavaRuntimeSupport.framework/Resources/Java/JavaRuntimeSupport.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/ui.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/laf.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/sunrsasign.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jsse.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jce.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/charsets.jar:/System/Library/Java/Extensions/AppleScriptEngine.jar:/System/Library/Java/Extensions/dns_sd.jar:/System/Library/Java/Extensions/j3daudio.jar:/System/Library/Java/Extensions/j3dcore.jar:/System/Library/Java/Extensions/j3dutils.jar:/System/Library/Java/Extensions/jai_codec.jar:/System/Library/Java/Extensions/jai_core.jar:/System/Library/Java/Extensions/mlibwrapper_jai.jar:/System/Library/Java/Extensions/MRJToolkit.jar:/System/Library/Java/Extensions/QTJava.zip:/System/Library/Java/Extensions/vecmath.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext/apple_provider.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext/dnsns.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext/localedata.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext/sunjce_provider.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext/sunpkcs11.jar
Application Classpath = /Applications/gephi.app/Contents/Resources/gephi/platform/lib/boot.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-modules.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-util-lookup.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-util.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_zh_TW.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/dt.jar
Startup Classpath = /Applications/gephi.app/Contents/Resources/gephi/platform/core/core.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/org-openide-filesystems.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_bg.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_si.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_zh_TW.jar:/Applications/gephi.app/Contents/MacOS/../Resources/gephi/bin/../gephi/core/locale/core_gephi.jar
-------------------------------------------------------------------------------
Loading native libraries
INFO [org.netbeans.core.startup.NbEvents]: Turning on modules:
org.openide.util.lookup [8.11.1 201202141941]
org.openide.util [8.19.1 201202141941]
org.openide.modules [7.27.1 201202141941]
org.openide.filesystems [7.53.2 201202141941]
org.openide.awt [7.39.1 201202141941]
org.netbeans.api.progress/1 [1.26.1 201202141941]
org.openide.dialogs [7.23.1 201202141941]
org.openide.nodes [7.25.1 201202141941]
org.openide.windows [6.48.2 201202141941]
org.netbeans.modules.editor.mimelookup/1 [1.24.1 201202141941]
org.openide.text [6.43.2 201202141941]
org.netbeans.swing.tabcontrol [1.29.1 201202141941]
org.netbeans.swing.outline [1.17.2 201202141941]
org.openide.explorer [6.40.1 201202141941]
org.openide.actions [6.24.1 201202141941]
org.netbeans.modules.queries/1 [1.25.1 201202141941]
org.netbeans.api.annotations.common/1 [1.11.1 201202141941]
org.openide.loaders [7.32.1 201202141941]
org.openide.io [1.29.1 201202141941]
org.netbeans.swing.plaf [1.23.1 201202141941]
org.netbeans.swing.dirchooser [1.1 120326]
org.netbeans.spi.quicksearch [1.12.1 201202141941]
org.netbeans.bootstrap/1 [2.44.3 201202141941]
org.netbeans.core.startup/1 [1.36.1 201202141941]
org.netbeans.modules.settings/1 [1.33.1 201202141941]
org.netbeans.modules.sendopts/2 [2.15.1 201202141941]
org.netbeans.modules.progress.ui [1.18.1 201202141941]
org.netbeans.modules.print [7.11.1 201202141941]
org.netbeans.modules.keyring [1.8.1.1 201202141941]
org.netbeans.core/2 [3.28.1 201202141941]
org.netbeans.modules.options.api/1 [1.24.1 201202141941]
org.netbeans.modules.options.keymap [1.16.1 201202141941]
org.netbeans.libs.jna/1 [1.16.1 201202141941]
org.netbeans.modules.masterfs/2 [2.34.2 201202141941]
org.netbeans.modules.keyring.impl [1.5.2 201202141941]
org.netbeans.modules.favorites/1 [1.27.1 201202141941]
org.netbeans.modules.editor.mimelookup.impl/1 [1.16.1 201202141941]
org.netbeans.modules.autoupdate.services [1.28.2 201202141941]
org.netbeans.modules.autoupdate.ui [1.25.1 201202141941]
org.netbeans.core.windows/2 [2.41.2 201202141941]
org.netbeans.modules.applemenu/1 [1.22.1 201202141941]
org.netbeans.libs.junit4 [1.14 201202141941]
org.netbeans.core.ui/1 [1.29.1 201202141941]
org.netbeans.core.nativeaccess/1 [1.14.1 201202141941]
org.netbeans.core.io.ui/1 [1.14.1 201202141941]
org.joda.time [1.0 120326]
org.jfree [1.0 120326]
org.jdesktop.swingx [1.6.1 120326]
org.gephi.utils.longtask [0.8.0.2 120326]
org.gephi.project.api [0.8.0.2 120326]
org.gephi.graph.api [0.8.0.3 120326]
org.gephi.data.attributes.api [0.8.0.6 120326]
org.gephi.lib.javacsv [2.0 120326]
org.gephi.dynamic.api [0.8.0.6 120326]
org.gephi.utils [0.8.0.3 120326]
org.gephi.datalab.api [0.8.0.10 120326]
org.gephi.visualization.api [0.8.0.1 120326]
org.gephi.tools.api [0.8.0.1 120326]
org.gephi.lib.validation [0.4 120326]
org.gephi.ui.utils [0.8 120326]
org.gephi.lib.gleem [1.0 120326]
org.gephi.utils.collection [0.8.0.1 120326]
org.gephi.lib.commonscompress [1.1 120326]
org.gephi.io.database.drivers [0.8.0.3 120326]
org.gephi.io.importer.api [0.8.0.4 120327]
org.gephi.desktop.mrufiles.api [0.8 120326]
org.gephi.desktop.project [0.8.0.1 120327]
org.gephi.lib.jogl [1.1.0.3 120326]
org.gephi.lib.flamingo [5.0.1 120326]
org.gephi.lib.commons.codec [1.4 120326]
org.gephi.ui.components [0.8.0.6 120326]
org.gephi.visualization [0.8.0.9 120327]
org.gephi.ui.workspace [0.8.1.0 120326]
org.gephi.ui.upgrader [0.8 120329]
org.gephi.statistics.api [0.8.1.1 120326]
org.gephi.statistics.plugin [0.8.0.6 120326]
org.gephi.ui.statistics.plugin [0.8.0.4 120326]
org.gephi.lib.jcalendar [1.0 120326]
org.gephi.lib.javamail [1.0 120326]
org.gephi.io.spigot.plugin [0.8.0.1 120327]
org.gephi.ui.spigot.plugin [0.8 120327]
org.gephi.ranking.api [0.8.1.4 120328]
org.gephi.ranking.plugin [0.8.1.3 120328]
org.gephi.ui.ranking.plugin [0.8.1.2 120328]
org.gephi.ui.propertyeditor [0.8.1 120326]
org.gephi.ui.project [0.8 120326]
org.gephi.lib.beansbinding [1.2.1 120326]
org.gephi.io.processor.plugin [0.8 120327]
org.gephi.ui.processor.plugin [0.8 120327]
org.gephi.partition.api [0.8 120326]
org.gephi.partition.plugin [0.8 120326]
org.gephi.ui.partition.plugin [0.8 120326]
org.gephi.io.importer.plugin [0.8.0.6 120329]
org.gephi.ui.importer.plugin [0.8.0.2 120329]
org.gephi.io.generator.api [0.8 120327]
org.gephi.io.generator.plugin [0.8.0.1 120327]
org.gephi.ui.generator.plugin [0.8 120327]
org.gephi.timeline [0.8.1.3 120327]
org.gephi.filters.api [0.8.0.5 120326]
org.gephi.filters.plugin [0.8.0.7 120329]
org.gephi.perspective.api [0.8.1 120326]
org.gephi.desktop.perspective [0.8.2.1 120326]
org.gephi.ui.filters.plugin [0.8.0.6 120329]
org.gephi.lib.itext [5.0.1 120326]
org.gephi.io.exporter.api [0.8 120326]
org.gephi.lib.batik [1.7 120326]
org.gephi.lib.processing [1.5.1 120326]
org.gephi.preview.api [0.8.1.9 120327]
org.gephi.io.exporter.preview [0.8.0.5 120327]
org.gephi.ui.exporter.preview [0.8.0.1 120327]
org.gephi.lib.staxutils [1.0 120326]
org.gephi.io.exporter.plugin [0.8.0.6 120326]
org.gephi.ui.exporter.plugin [0.8.0.5 120326]
org.gephi.lib.timing [1.1 120326]
org.gephi.ui.components.SplineEditor [0.8.0.1 120328]
org.gephi.algorithms [0.8.0.1 120326]
org.gephi.tools.plugin [0.8.0.5 120327]
org.gephi.preview.plugin [0.8.1.6 120327]
org.gephi.layout.api [0.8.0.1 120326]
org.gephi.layout.plugin [0.8.0.3 120326]
org.gephi.graph.dhns [0.8.0.5 120326]
org.gephi.filters [0.8.0.5 120326]
org.gephi.dynamic [0.8.0.5 120329]
org.gephi.desktop.welcome [0.8.0.3 120327]
org.gephi.desktop.tools [0.8.0.3 120327]
org.gephi.desktop.timeline [0.8.1.3 120327]
org.gephi.desktop.statistics [0.8.1.2 120326]
org.gephi.desktop.spigot [0.8 120327]
org.gephi.desktop.recentfiles [1.0.1 120327]
org.gephi.desktop.ranking [0.8.1.5 120328]
org.gephi.desktop.progress [0.8.0.4 120326]
org.gephi.desktop.io.export [0.8.0.1 120326]
org.gephi.desktop.preview [0.8.1.6 120327]
org.gephi.desktop.partition [0.8 120326]
org.gephi.desktop.layout [0.8.0.5 120326]
org.gephi.desktop.importer [0.8.0.1 120327]
org.gephi.desktop.hierarchy [0.8.0.1 120327]
org.gephi.desktop.generate [0.8 120327]
org.gephi.desktop.filters [0.8.0.2 120326]
org.gephi.desktop.datalab [0.8.0.9 120326]
org.gephi.desktop.context [0.8.0.1 120326]
org.gephi.clustering.api [0.8 120326]
org.gephi.desktop.clustering [0.8.0.1 120327]
org.gephi.datalab.plugin [0.8.0.9 120327]
org.gephi.data.attributes [0.8.0.3 120326]
org.gephi.clustering.plugin [0.8 120326]
org.gephi.branding.desktop [0.8.0.8 120327]
WARNING [org.netbeans.TopSecurityManager]: use of system property netbeans.user has been obsoleted in favor of InstalledFileLocator at org.gephi.ui.upgrader.Upgrader.getCurrentVersion(Upgrader.java:123)
Current Version is 081
WARNING [org.netbeans.modules.autoupdate.updateproviders.AutoupdateCatalogFactory]: Services/AutoupdateType/org_gephi_branding_desktop_update_center.instance: url_key attribute deprecated in favor of url
WARNING [org.netbeans.modules.autoupdate.updateproviders.AutoupdateCatalogFactory]: Services/AutoupdateType/org_gephi_branding_desktop_update_center_1.instance: url_key attribute deprecated in favor of url
INFO [org.netbeans.modules.autoupdate.updateprovider.DownloadListener]: Reading URL http://gephi.org/updates/thirdparty/0.8 ... atalog.xml failed (java.io.IOException: Timeout while opening connection to http://gephi.org/updates/thirdparty/0.8 ... atalog.xml)
INFO [org.netbeans.modules.autoupdate.updateprovider.DownloadListener]: Reading URL http://gephi.org/updates/official/0.8.1 ... atalog.xml failed (java.io.IOException: Timeout while opening connection to http://gephi.org/updates/official/0.8.1 ... atalog.xml)
INFO [org.netbeans.modules.autoupdate.ui.actions.AutoupdateCheckScheduler]
java.util.concurrent.TimeoutException
at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:228)
at java.util.concurrent.FutureTask.get(FutureTask.java:91)
at org.netbeans.modules.autoupdate.updateprovider.NetworkAccess$Task$1.run(NetworkAccess.java:97)
Caused: java.io.IOException: Timeout while opening connection to http://gephi.org/updates/official/0.8.1 ... atalog.xml
at org.netbeans.modules.autoupdate.updateprovider.NetworkAccess$Task$1.run(NetworkAccess.java:117)
Caused: java.io.IOException: Timeout while opening connection to http://gephi.org/updates/official/0.8.1 ... atalog.xml
at org.netbeans.modules.autoupdate.updateprovider.DownloadListener.notifyException(DownloadListener.java:103)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogCache.copy(AutoupdateCatalogCache.java:255)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogCache.writeCatalogToCache(AutoupdateCatalogCache.java:100)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogProvider.refresh(AutoupdateCatalogProvider.java:137)
at org.netbeans.modules.autoupdate.services.UpdateUnitProviderImpl.refresh(UpdateUnitProviderImpl.java:174)
at org.netbeans.api.autoupdate.UpdateUnitProvider.refresh(UpdateUnitProvider.java:186)
[catch] at org.netbeans.modules.autoupdate.ui.actions.AutoupdateCheckScheduler$4.run(AutoupdateCheckScheduler.java:156)
at org.openide.util.RequestProcessor$Task.run(RequestProcessor.java:1411)
at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:1991)
INFO [org.netbeans.modules.autoupdate.ui.actions.AutoupdateCheckScheduler]
java.util.concurrent.TimeoutException
at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:228)
at java.util.concurrent.FutureTask.get(FutureTask.java:91)
at org.netbeans.modules.autoupdate.updateprovider.NetworkAccess$Task$1.run(NetworkAccess.java:97)
Caused: java.io.IOException: Timeout while opening connection to http://gephi.org/updates/thirdparty/0.8 ... atalog.xml
at org.netbeans.modules.autoupdate.updateprovider.NetworkAccess$Task$1.run(NetworkAccess.java:117)
Caused: java.io.IOException: Timeout while opening connection to http://gephi.org/updates/thirdparty/0.8 ... atalog.xml
at org.netbeans.modules.autoupdate.updateprovider.DownloadListener.notifyException(DownloadListener.java:103)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogCache.copy(AutoupdateCatalogCache.java:255)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogCache.writeCatalogToCache(AutoupdateCatalogCache.java:100)
at org.netbeans.modules.autoupdate.updateprovider.AutoupdateCatalogProvider.refresh(AutoupdateCatalogProvider.java:137)
at org.netbeans.modules.autoupdate.services.UpdateUnitProviderImpl.refresh(UpdateUnitProviderImpl.java:174)
at org.netbeans.api.autoupdate.UpdateUnitProvider.refresh(UpdateUnitProvider.java:186)
[catch] at org.netbeans.modules.autoupdate.ui.actions.AutoupdateCheckScheduler$4.run(AutoupdateCheckScheduler.java:156)
at org.openide.util.RequestProcessor$Task.run(RequestProcessor.java:1411)
at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:1991)
-
bmuller
- Posts:6
- Joined:25 Sep 2012 12:47 [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Startup hangs on Mac OS X 10.6 64-bit
Are there any further suggestions to try? As it is, Gephi is unusable on my system, so I won't be using it.
-
bmuller
- Posts:6
- Joined:25 Sep 2012 12:47 [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Startup hangs on Mac OS X 10.6 64-bit
I do in fact use a proxy, Stanford's offsite proxy for access to publications. However, I turned off all proxies to test, and I'm getting the same behavior from Gephi.
The zip file you pointed me to looks like the same version number, but also it would appear to be the windows version, not the Mac version, so I don't see how to run it on my Mac. Is there a java command line startup I can use to run it from the unzipped directory?
The zip file you pointed me to looks like the same version number, but also it would appear to be the windows version, not the Mac version, so I don't see how to run it on my Mac. Is there a java command line startup I can use to run it from the unzipped directory?
-
eduramiba
- Gephi Code Manager
- Posts:1064
- Joined:22 Mar 2010 15:30
- Location:Madrid, Spain [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Startup hangs on Mac OS X 10.6 64-bit
I think the 'gephi' script in the bin folder works for mac, like it does in linux.bmuller wrote:I do in fact use a proxy, Stanford's offsite proxy for access to publications. However, I turned off all proxies to test, and I'm getting the same behavior from Gephi.
The zip file you pointed me to looks like the same version number, but also it would appear to be the windows version, not the Mac version, so I don't see how to run it on my Mac. Is there a java command line startup I can use to run it from the unzipped directory?
Eduardo
-
bmuller
- Posts:6
- Joined:25 Sep 2012 12:47 [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Startup hangs on Mac OS X 10.6 64-bit
It doesn't work on my Mac, at least out of the box.
Here's the -x version, looks like something to do with Mac line returns.macavity:bin muller$ sh gephi
: command not found
: command not found
: command not found
'ephi: line 29: syntax error near unexpected token `in
'ephi: line 29: `case "`uname`" in
macavity:bin muller$ sh -x gephi
+ $'\r'
: command not found
+ $'\r'
: command not found
+ PRG=$'gephi\r'
+ $'\r'
: command not found
'ephi: line 29: syntax error near unexpected token `in
'ephi: line 29: `case "`uname`" in