Can't get 0.8 beta to run on Mac OS X 10.7.3
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- Joined:04 Mar 2012 06:03 [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Hi,
I'm trying to get Gephi 0.8 beta (downloaded today) running on my Mac (Lion, 10.7.3) and have no success with it:
* 1.6.0_22-b04-307.jdk fails without any error or other message
* 1.6.0_26-b03-383.jdk (my default jdk) fails with "Unable to load libjogl_awt.jnilib"
* OpenJDK 1.7.0-u4-b13 fails with "Init failed : Unsupported os / arch ( Mac OS X / amd64 ). Please check you're using a 32-bit JVM.
Any ideas ?
cheers,
Tom
I'm trying to get Gephi 0.8 beta (downloaded today) running on my Mac (Lion, 10.7.3) and have no success with it:
* 1.6.0_22-b04-307.jdk fails without any error or other message
* 1.6.0_26-b03-383.jdk (my default jdk) fails with "Unable to load libjogl_awt.jnilib"
* OpenJDK 1.7.0-u4-b13 fails with "Init failed : Unsupported os / arch ( Mac OS X / amd64 ). Please check you're using a 32-bit JVM.
Any ideas ?
cheers,
Tom
- mbastian
- Gephi Architect
- Posts:728
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Re: Can't get 0.8 beta to run on Mac OS X 10.7.3
That might be related to this issue. Can you give me the list of files you have in the /Library/Java/Extensions/ folder? Thanks.
Gephi is working on Lion normally, I've tested it myself.
Gephi is working on Lion normally, I've tested it myself.
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- Posts:6
- Joined:04 Mar 2012 06:03 [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Can't get 0.8 beta to run on Mac OS X 10.7.3
I only have PostgreSQL in there (for whatever reason):
$ ls /Library/Java/Extensions
postgresql-8.3-603.jdbc3.jar
and a
find /Library/Java/ -iname "*ogl*"
doesn't show anything either.
$ ls /Library/Java/Extensions
postgresql-8.3-603.jdbc3.jar
and a
find /Library/Java/ -iname "*ogl*"
doesn't show anything either.
- mbastian
- Gephi Architect
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Re: Can't get 0.8 beta to run on Mac OS X 10.7.3
Ok so that's not the issue. Can you please look if you have a messages.log file in
and if yes paste it here
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/Users/username/Library/Application/Support/gephi
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Re: Can't get 0.8 beta to run on Mac OS X 10.7.3
Running this:
using the gephi stable 0.8-beta build gives me
Running gephi with the older JDK
gives me this instead:
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/Applications/gephi.app/Contents/MacOS/gephi --jdkhome /Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Home
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-------------------------------------------------------------------------------
>Log Session: Sunday, March 4, 2012 12:03:46 PM PST
>System Info:
Product Version = Gephi 0.8 beta
Operating System = Mac OS X version 10.7.3 running on x86_64
Java; VM; Vendor = 1.6.0_26; Java HotSpot(TM) 64-Bit Server VM 20.1-b02-383; Apple Inc.
Runtime = Java(TM) SE Runtime Environment 1.6.0_26-b03-383-11D50b
Java Home = /Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Home
System Locale; Encoding = en_US (gephi); MacRoman
Home Directory = /Users/tomdz
Current Directory = /Users/tomdz
User Directory = /Users/tomdz/Library/Application Support/gephi/dev
Installation = /Applications/gephi.app/Contents/Resources/gephi/gephi
/Applications/gephi.app/Contents/Resources/gephi/platform
Boot & Ext. Classpath = /Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Classes/jsfd.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Classes/classes.jar:/System/Library/Frameworks/JavaVM.framework/Frameworks/JavaRuntimeSupport.framework/Resources/Java/JavaRuntimeSupport.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Classes/ui.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Classes/laf.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Classes/sunrsasign.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Classes/jsse.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Classes/jce.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Classes/charsets.jar:/Library/Java/Extensions/postgresql-8.3-603.jdbc3.jar:/System/Library/Java/Extensions/AppleScriptEngine.jar:/System/Library/Java/Extensions/dns_sd.jar:/System/Library/Java/Extensions/j3daudio.jar:/System/Library/Java/Extensions/j3dcore.jar:/System/Library/Java/Extensions/j3dutils.jar:/System/Library/Java/Extensions/jai_codec.jar:/System/Library/Java/Extensions/jai_core.jar:/System/Library/Java/Extensions/mlibwrapper_jai.jar:/System/Library/Java/Extensions/MRJToolkit.jar:/System/Library/Java/Extensions/QTJava.zip:/System/Library/Java/Extensions/vecmath.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Home/lib/ext/apple_provider.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Home/lib/ext/dnsns.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Home/lib/ext/localedata.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Home/lib/ext/sunjce_provider.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Home/lib/ext/sunpkcs11.jar
Application Classpath = /Applications/gephi.app/Contents/Resources/gephi/platform/lib/boot.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-modules.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-util-lookup.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-util.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_zh_TW.jar:/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Home/lib/dt.jar
Startup Classpath = /Applications/gephi.app/Contents/Resources/gephi/platform/core/core.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/org-openide-filesystems.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_zh_TW.jar:/Applications/gephi.app/Contents/MacOS/../Resources/gephi/bin/../gephi/core/locale/core_gephi.jar
-------------------------------------------------------------------------------
WARNING [org.netbeans.core.modules]: the modules [org.gephi.desktop.preview, org.gephi.ui.exporter.plugin, org.gephi.ui.filters.plugin, org.gephi.ui.statistics.plugin] use org.jdesktop.layout which is deprecated: Use javax.swing.GroupLayout instead. (In form editor: select Form ... in Inspector; change Layout Generation Style to Standard Java 6 code.)
Loading native libraries
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/Applications/gephi.app/Contents/MacOS/gephi --jdkhome /Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home/
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-------------------------------------------------------------------------------
>Log Session: Sunday, March 4, 2012 12:06:20 PM PST
>System Info:
Product Version = Gephi 0.8 beta
Operating System = Mac OS X version 10.7.3 running on x86_64
Java; VM; Vendor = 1.6.0_22; Java HotSpot(TM) 64-Bit Server VM 17.1-b03-307; Apple Inc.
Runtime = Java(TM) SE Runtime Environment 1.6.0_22-b04-307-11D50b
Java Home = /Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home
System Locale; Encoding = en_US (gephi); MacRoman
Home Directory = /Users/tomdz
Current Directory = /Users/tomdz
User Directory = /Users/tomdz/Library/Application Support/gephi/dev
Installation = /Applications/gephi.app/Contents/Resources/gephi/gephi
/Applications/gephi.app/Contents/Resources/gephi/platform
Boot & Ext. Classpath = /Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Classes/jsfd.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Classes/classes.jar:/System/Library/Frameworks/JavaVM.framework/Frameworks/JavaRuntimeSupport.framework/Resources/Java/JavaRuntimeSupport.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Classes/ui.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Classes/laf.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Classes/sunrsasign.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Classes/jsse.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Classes/jce.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Classes/charsets.jar:/Library/Java/Extensions/postgresql-8.3-603.jdbc3.jar:/System/Library/Java/Extensions/AppleScriptEngine.jar:/System/Library/Java/Extensions/dns_sd.jar:/System/Library/Java/Extensions/j3daudio.jar:/System/Library/Java/Extensions/j3dcore.jar:/System/Library/Java/Extensions/j3dutils.jar:/System/Library/Java/Extensions/jai_codec.jar:/System/Library/Java/Extensions/jai_core.jar:/System/Library/Java/Extensions/mlibwrapper_jai.jar:/System/Library/Java/Extensions/MRJToolkit.jar:/System/Library/Java/Extensions/QTJava.zip:/System/Library/Java/Extensions/vecmath.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home/lib/ext/apple_provider.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home/lib/ext/dnsns.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home/lib/ext/localedata.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home/lib/ext/sunjce_provider.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home/lib/ext/sunpkcs11.jar
Application Classpath = /Applications/gephi.app/Contents/Resources/gephi/platform/lib/boot.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-modules.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-util-lookup.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/org-openide-util.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/boot_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-modules_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util-lookup_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/lib/locale/org-openide-util_zh_TW.jar:/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home/lib/dt.jar
Startup Classpath = /Applications/gephi.app/Contents/Resources/gephi/platform/core/core.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/org-openide-filesystems.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/core_zh_TW.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ar_SA.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ca.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_cs.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_de.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_es.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_fr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_gl_ES.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_in_ID.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_it.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ja.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ko.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_nl_NL.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pl.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pt_BR.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_pt_PT.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ro.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_ru.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_sq.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_sv.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_tr.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_zh_CN.jar:/Applications/gephi.app/Contents/Resources/gephi/platform/core/locale/org-openide-filesystems_zh_TW.jar:/Applications/gephi.app/Contents/MacOS/../Resources/gephi/bin/../gephi/core/locale/core_gephi.jar
-------------------------------------------------------------------------------
WARNING [org.netbeans.core.modules]: the modules [org.gephi.desktop.preview, org.gephi.ui.exporter.plugin, org.gephi.ui.filters.plugin, org.gephi.ui.statistics.plugin] use org.jdesktop.layout which is deprecated: Use javax.swing.GroupLayout instead. (In form editor: select Form ... in Inspector; change Layout Generation Style to Standard Java 6 code.)
java.lang.NoClassDefFoundError: apple/laf/CoreUIControl
at com.apple.laf.AquaLookAndFeel$1.run(AquaLookAndFeel.java:124)
at java.security.AccessController.doPrivileged(Native Method)
at com.apple.laf.AquaLookAndFeel.initialize(AquaLookAndFeel.java:121)
at javax.swing.UIManager.setLookAndFeel(UIManager.java:519)
at javax.swing.UIManager.setLookAndFeel(UIManager.java:564)
at javax.swing.UIManager.initializeDefaultLAF(UIManager.java:1329)
at javax.swing.UIManager.initialize(UIManager.java:1422)
at javax.swing.UIManager.maybeInitialize(UIManager.java:1410)
at javax.swing.UIManager.getLookAndFeel(UIManager.java:473)
at org.netbeans.swing.plaf.Startup.getLookAndFeel(Startup.java:166)
at org.netbeans.swing.plaf.Startup.initialize(Startup.java:115)
at org.netbeans.swing.plaf.Startup.<init>(Startup.java:108)
at org.netbeans.swing.plaf.Startup.run(Startup.java:486)
at org.netbeans.core.CoreBridgeImpl.initializePlaf(CoreBridgeImpl.java:124)
at org.netbeans.core.startup.Main.initUICustomizations(Main.java:144)
at org.netbeans.core.startup.NbInstaller.load(NbInstaller.java:361)
at org.netbeans.ModuleManager.enable(ModuleManager.java:1025)
at org.netbeans.core.startup.ModuleList.installNew(ModuleList.java:318)
at org.netbeans.core.startup.ModuleList.trigger(ModuleList.java:254)
at org.netbeans.core.startup.ModuleSystem.restore(ModuleSystem.java:294)
at org.netbeans.core.startup.Main.getModuleSystem(Main.java:172)
at org.netbeans.core.startup.Main.start(Main.java:308)
at org.netbeans.core.startup.TopThreadGroup.run(TopThreadGroup.java:123)
at java.lang.Thread.run(Thread.java:680)
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- Posts:6
- Joined:04 Mar 2012 06:03 [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Can't get 0.8 beta to run on Mac OS X 10.7.3
Fwiw, setting LD_LIBRARY_PATH or DYLD_LIBRARY_PATH, e.g.
or passing java.library.path on the command line, e.g.
don't seem to make any difference.
Code: Select all
export LD_LIBRARY_PATH="/Applications/gephi.app/Contents/Resources/gephi/gephi/modules/lib/macosx-universal/"
export DYLD_LIBRARY_PATH="/Applications/gephi.app/Contents/Resources/gephi/gephi/modules/lib/macosx-universal/"
Code: Select all
/Applications/gephi.app/Contents/MacOS/gephi --jdkhome /Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Home/ -J-Djava.library.path=/Applications/gephi.app/Contents/Resources/gephi/gephi/modules/lib/macosx-universal/
-
- Posts:6
- Joined:04 Mar 2012 06:03 [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Can't get 0.8 beta to run on Mac OS X 10.7.3
A quick test program showed that the libjogl_awt library is linked against /System/Library/Frameworks/JavaVM.framework/Libraries/libjawt.dylib, however that path is not created anymore with more recent apple jdk's.
Creating it manually via
fixed the problem for me and Gephi now starts.
Maybe the gephi start script could in the 'darwin' case check for the existence of '/System/Library/Frameworks/JavaVM.framework/Libraries/' and warn/error out when it does not exist ?
Creating it manually via
Code: Select all
sudo ln -s /Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK
Maybe the gephi start script could in the 'darwin' case check for the existence of '/System/Library/Frameworks/JavaVM.framework/Libraries/' and warn/error out when it does not exist ?
- mbastian
- Gephi Architect
- Posts:728
- Joined:10 Dec 2009 10:11
- Location:San Francisco, CA [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Can't get 0.8 beta to run on Mac OS X 10.7.3
Thanks for this detailed investigation. Sounds like this is a serious issue as Gephi won't start without that library. I couldn't really find any official documentation mentionning these virtual links being removed.
We have our own library loader in the JOGL Wrapper module and we could add something like below for Mac OS X:
That should find the current JDK 'Libraries' folder in any case and directly load the library. That would happen before we load the 'jogl_awt' library so it should be fine. What do you think?
We have our own library loader in the JOGL Wrapper module and we could add something like below for Mac OS X:
Code: Select all
//Make sure jawt is loaded on mac os x
File defaultJdk = new File("/System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK");
if (!defaultJdk.exists()) {
String javaHome = System.getProperty("java.home");
javaHome = javaHome.substring(0, javaHome.lastIndexOf("Home"));
defaultJdk = new File(javaHome);
}
File libraryPath = new File(defaultJdk, "Libraries");
if (libraryPath.exists()) {
loadLibrary(new File(libraryPath, "libjawt.dylib"));
} else {
System.out.println("Can't locate the default Libraries folder");
}
-
- Posts:6
- Joined:04 Mar 2012 06:03 [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Can't get 0.8 beta to run on Mac OS X 10.7.3
That should work, though it would be nice if the error message would be a bit more detailed (e.g. 'please make sure that '.../CurrentJDK' is a symbolic link that points to your current java installation), and is shown in the popup error window. Maybe a link to a FAQ entry in the error window ?
Also, MacOS has a useful tool, /usr/libexec/java_home, that returns the current java home (without needing to set JAVA_HOME), e.g.
in my case. That might be useful to find the java to use for gephi.
Also, MacOS has a useful tool, /usr/libexec/java_home, that returns the current java home (without needing to set JAVA_HOME), e.g.
Code: Select all
$ /usr/libexec/java_home
/Library/Java/JavaVirtualMachines/1.6.0_26-b03-383.jdk/Contents/Home
- albertocottica
- Posts:12
- Joined:24 Jun 2012 13:46 [phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable
Re: Can't get 0.8 beta to run on Mac OS X 10.7.3
Hello Bastian and all, I have 10.7.4 and can't get Gephi started either. I tried Tom's sudo command, but my machine informs me that the file exists.
Also, I have no directory called gephi in
I am really hoping you guys have some ideas here...
Also, I have no directory called gephi in
Code: Select all
/Users/username/Library/Application Support