Search found 4 matches

by bumper_boy2000
09 Feb 2012 19:16
Forum: Data Import / Export
Topic: Help with basics for graph visualization
Replies: 2
Views: 1404

Help with basics for graph visualization

I've scanned through the forums, and haven't found any definite guide to achieve what I'm expecting. I have attached a file below. The file name is corum.csv which contains data from CORUM. How the data looks like is as follows: C-CFTR2-NHERF-ezrin#complex;P13569;P15311;O14745 E.F.G#complex;P62304;P...
by bumper_boy2000
09 Feb 2012 14:58
Forum: Layouts
Topic: Parallel Force Atlas
Replies: 25
Views: 20333

Re: Parallel Force Atlas

i just checked. lol my speed's already been set to 1 for all graphs. i guess that's the best it can do. :/
by bumper_boy2000
09 Feb 2012 14:34
Forum: Layouts
Topic: Parallel Force Atlas
Replies: 25
Views: 20333

Re: Parallel Force Atlas

There is no convergence check at the end of each iteration of PFA. It is up to the user to stop the layout when satisfied with the result. If your graphs are small enough, the layout will stabilize itself quite quickly. If after running the layout for a while some nodes keep moving around from one ...
by bumper_boy2000
07 Feb 2012 19:27
Forum: Layouts
Topic: Parallel Force Atlas
Replies: 25
Views: 20333

Re: Parallel Force Atlas

hi guys. I have a really trivial question. does PFA run indefinitely? I can see that it's much faster than FA1 and FA2, but my graphs don't seem to finish rendering. :/