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Gephi forumsPlease post new questions on facebook group too (https://www.facebook.com/groups/gephi) 2018-02-02T14:16:59+01:00 https://forum-gephi.org/app.php/feed/topic/6409 2018-02-02T14:16:59+01:002018-02-02T14:16:59+01:00 https://forum-gephi.org/viewtopic.php?t=6409&p=14941#p14941 <![CDATA[Re: Finding nodes that share more than one edge]]>
Thank you very much

Statistics:Posted by rjalex — 02 Feb 2018 14:16

]]> 2018-02-02T12:40:57+01:002018-02-02T12:40:57+01:00 https://forum-gephi.org/viewtopic.php?t=6409&p=14938#p14938 <![CDATA[Re: Finding nodes that share more than one edge]]> The multimode networks plugin might be useful: https://seinecle.github.io/gephi-tutori ... ph-en.html

Statistics:Posted by eduramiba — 02 Feb 2018 12:40

]]> 2018-02-02T12:26:47+01:002018-02-02T12:26:47+01:00 https://forum-gephi.org/viewtopic.php?t=6409&p=14937#p14937 <![CDATA[Finding nodes that share more than one edge]]> I have a bipartite oriented graph modeling a metabolic network with two types of molecules: xenobiotics (drugs and other biological exogenous substance) and their metabolizing enzymes.

Have three types of relations:
  • An enzyme can metabolize a xenobiotic
  • A xenobitoc can inhibit an enzyme
  • A xenobiotic can augment an enzyme
In some (rarish) cases a xenobiotic is both metabolized by an enzyme but at the same time it also inhibits or augments the same enzyme.

This is modeled with two oriented arcs between the two molecules, one expresses the metabolizes relation while the other the inhibits.

Is there a way to filter the graph to only show these doubly linked molecules?

Thank you

Statistics:Posted by rjalex — 02 Feb 2018 12:26

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