Gephi forums

Re: Early 0.7beta bugs fixed

2010-10-08T17:11:40+01:00

Btw, I fixed the bug with negative edges on preview, see bug 656955

Statistics:Posted by mbastian — 08 Oct 2010 17:11

Re: Early 0.7beta bugs fixed

2010-10-07T13:05:41+01:00

Btw, all releases are available on Launchpad: https://launchpad.net/gephi/+download

Statistics:Posted by admin — 07 Oct 2010 13:05

Re: Early 0.7beta bugs fixed

2010-10-07T12:29:58+01:00

That did the job - thank you so much!
Andrew

Statistics:Posted by aplume — 07 Oct 2010 12:29

Re: Early 0.7beta bugs fixed

2010-10-07T12:21:13+01:00

Your edges have all the same id, this is not correct.

Simply remove all

CODE:

id="0"

in your file. The source and target is enough for edges.

Statistics:Posted by mbastian — 07 Oct 2010 12:21

Re: Early 0.7beta bugs fixed

2010-10-07T12:12:48+01:00

Thanks! For example:

CODE:

Gexf.netFirst test of manually encoded data

Much appreciated for any help you can offer!

Statistics:Posted by aplume — 07 Oct 2010 12:12

Re: Early 0.7beta bugs fixed

2010-10-07T12:02:14+01:00

Can you please post here a sample of your GEXF file? Negative weights are normally fully supported and shouldn't generate any errors.

Statistics:Posted by mbastian — 07 Oct 2010 12:02

Re: Early 0.7beta bugs fixed

2010-10-07T11:43:51+01:00

I just installed 0.7 beta and when trying to open existing .gexf files that opened fine in alpha, they come in with loads of errors and the edges are not imported.
Can I roll back to an alpha release? I can't find anywhere to download this on the site.
Any help much appreciated!
P.S. My networks have negative edge weights.

Statistics:Posted by aplume — 07 Oct 2010 11:43

Re: Early 0.7beta bugs fixed

2010-10-06T01:26:03+01:00

You are right. Seems like it is related to the negative weights for the edges. I changed them all to 1 and that seems to have done the trick Everything now works perfect!

Thanks
Anil

Statistics:Posted by ajegga — 06 Oct 2010 01:26

Re: Early 0.7beta bugs fixed

2010-10-06T01:09:09+01:00

As far as I know there are negative values for the edge weights. And the "rescale weight" option is unchecked. I tried with checked in too but getting the same error. I tried it several other networks too (created using the 0.7 alpha version) and they all throw the same error. If I use the alpha version (another computer) instead, everything works fine.

Thanks
Anil

Statistics:Posted by ajegga — 06 Oct 2010 01:09

Re: Early 0.7beta bugs fixed

2010-10-05T22:14:32+01:00

Are your edge weight negative?

And could you tell me if you tired with or without the "rescale weight" option in Preview?

Thanks

Statistics:Posted by mbastian — 05 Oct 2010 22:14

0.7 beta Vs 0.7 alpha

2010-10-05T00:55:55+01:00

I have also noticed that when I try to open the old project files (alpha version) and try to preview them, it is throwing up an error. Below is the stack trace. I am also unable to export the pdf. The pdf file is created but it is blank.

java.lang.IllegalArgumentException: negative width
at java.awt.BasicStroke.(Unknown Source)
at java.awt.BasicStroke.(Unknown Source)
at processing.core.PGraphicsJava2D.strokeImpl(PGraphicsJava2D.java:1417)
at processing.core.PGraphicsJava2D.strokeWeight(PGraphicsJava2D.java:1398)
at processing.core.PApplet.strokeWeight(PApplet.java:7757)
at org.gephi.desktop.preview.ProcessingPreview.renderEdge(ProcessingPreview.java:370)
at org.gephi.desktop.preview.ProcessingPreview.renderGraphUndirectedEdges(ProcessingPreview.java:252)
at org.gephi.desktop.preview.ProcessingPreview.renderGraphEdges(ProcessingPreview.java:225)
at org.gephi.desktop.preview.ProcessingPreview.renderGraph(ProcessingPreview.java:210)
at org.gephi.desktop.preview.ProcessingPreview.draw(ProcessingPreview.java:88)
at processing.core.PApplet.handleDraw(PApplet.java:1425)
at processing.core.PApplet.run(PApplet.java:1327)
[catch] at java.lang.Thread.run(Unknown Source)

Statistics:Posted by ajegga — 05 Oct 2010 00:55

Early 0.7beta bugs fixed

2010-10-03T13:31:29+01:00

Five bugfixes were just deployed to updates

Chaining Dynamic Filter - https://bugs.launchpad.net/gephi/+bug/654018
Statistics report not refreshed after a new execution - https://bugs.launchpad.net/gephi/+bug/654036
Labels are not hidden on Preview - https://bugs.launchpad.net/gephi/+bug/654006
Data Lab: number columns not sorted by value - https://bugs.launchpad.net/gephi/+bug/653640
NullPointerException on saving project - https://bugs.launchpad.net/gephi/+bug/622154

Statistics:Posted by mbastian — 03 Oct 2010 13:31